Draft genome of the oomycete pathogen Phytophthora cactorum strain LV007 isolated from European beech (Fagus sylvatica).
Identifieur interne : 000A24 ( Main/Exploration ); précédent : 000A23; suivant : 000A25Draft genome of the oomycete pathogen Phytophthora cactorum strain LV007 isolated from European beech (Fagus sylvatica).
Auteurs : Laura J. Grenville-Briggs [Suède] ; Sandeep K. Kushwaha [Suède] ; Michelle R. Cleary [Suède] ; Johanna Witzell [Suède] ; Eugene I. Savenkov [Suède] ; Stephen C. Whisson [Royaume-Uni] ; Aakash Chawade [Suède] ; Ramesh R. Vetukuri [Suède]Source :
- Genomics data [ 2213-5960 ] ; 2017.
Abstract
Phytophthora cactorum is a broad host range phytopathogenic oomycete. P. cactorum strain LV007 was isolated from a diseased European Beech (Fagus sylvatica) in Malmö, Sweden in 2016. The draft genome of P. cactorum strain LV007 is 67.81 Mb. It contains 15,567 contigs and 21,876 predicted protein-coding genes. As reported for other phytopathogenic Phytophthora species, cytoplasmic effector proteins including RxLR and CRN families were identified. The genome sequence has been deposited at DDBJ/ENA/GenBank under the accession NBIJ00000000. The version described in this paper is version NBIJ01000000.
DOI: 10.1016/j.gdata.2017.05.010
PubMed: 28560165
PubMed Central: PMC5435576
Affiliations:
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Grenville-Briggs</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Protection biology, Swedish University of Agricultural Sciences, Alnarp, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Protection biology, Swedish University of Agricultural Sciences, Alnarp</wicri:regionArea><wicri:noRegion>Alnarp</wicri:noRegion></affiliation></author><author><name sortKey="Kushwaha, Sandeep K" sort="Kushwaha, Sandeep K" uniqKey="Kushwaha S" first="Sandeep K" last="Kushwaha">Sandeep K. Kushwaha</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp</wicri:regionArea><wicri:noRegion>Alnarp</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>National Bioinformatics Infrastructure Sweden (NBIS), Department of Biology, Lund University, Lund, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>National Bioinformatics Infrastructure Sweden (NBIS), Department of Biology, Lund University, Lund</wicri:regionArea><wicri:noRegion>Lund</wicri:noRegion></affiliation></author><author><name sortKey="Cleary, Michelle R" sort="Cleary, Michelle R" uniqKey="Cleary M" first="Michelle R" last="Cleary">Michelle R. Cleary</name><affiliation wicri:level="1"><nlm:affiliation>Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Alnarp, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Alnarp</wicri:regionArea><wicri:noRegion>Alnarp</wicri:noRegion></affiliation></author><author><name sortKey="Witzell, Johanna" sort="Witzell, Johanna" uniqKey="Witzell J" first="Johanna" last="Witzell">Johanna Witzell</name><affiliation wicri:level="1"><nlm:affiliation>Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Alnarp, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Alnarp</wicri:regionArea><wicri:noRegion>Alnarp</wicri:noRegion></affiliation></author><author><name sortKey="Savenkov, Eugene I" sort="Savenkov, Eugene I" uniqKey="Savenkov E" first="Eugene I" last="Savenkov">Eugene I. Savenkov</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, Uppsala BioCenter, Linnean Centre of Plant Biology, Swedish University of Agricultural Sciences, Uppsala, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Biology, Uppsala BioCenter, Linnean Centre of Plant Biology, Swedish University of Agricultural Sciences, Uppsala</wicri:regionArea><wicri:noRegion>Uppsala</wicri:noRegion></affiliation></author><author><name sortKey="Whisson, Stephen C" sort="Whisson, Stephen C" uniqKey="Whisson S" first="Stephen C" last="Whisson">Stephen C. Whisson</name><affiliation wicri:level="1"><nlm:affiliation>Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, United Kingdom.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee</wicri:regionArea><wicri:noRegion>Dundee</wicri:noRegion></affiliation></author><author><name sortKey="Chawade, Aakash" sort="Chawade, Aakash" uniqKey="Chawade A" first="Aakash" last="Chawade">Aakash Chawade</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp</wicri:regionArea><wicri:noRegion>Alnarp</wicri:noRegion></affiliation></author><author><name sortKey="Vetukuri, Ramesh R" sort="Vetukuri, Ramesh R" uniqKey="Vetukuri R" first="Ramesh R" last="Vetukuri">Ramesh R. Vetukuri</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Protection biology, Swedish University of Agricultural Sciences, Alnarp, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Protection biology, Swedish University of Agricultural Sciences, Alnarp</wicri:regionArea><wicri:noRegion>Alnarp</wicri:noRegion></affiliation></author></analytic><series><title level="j">Genomics data</title><idno type="ISSN">2213-5960</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><i>Phytophthora cactorum</i> is a broad host range phytopathogenic oomycete. <i>P. cactorum</i> strain LV007 was isolated from a diseased European Beech (<i>Fagus sylvatica</i>) in Malmö, Sweden in 2016. The draft genome of <i>P. cactorum</i> strain LV007 is 67.81 Mb. It contains 15,567 contigs and 21,876 predicted protein-coding genes. As reported for other phytopathogenic Phytophthora species, cytoplasmic effector proteins including RxLR and CRN families were identified. The genome sequence has been deposited at DDBJ/ENA/GenBank under the accession NBIJ00000000. The version described in this paper is version NBIJ01000000.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">28560165</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>29</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">2213-5960</ISSN><JournalIssue CitedMedium="Print"><Volume>12</Volume><PubDate><Year>2017</Year><Month>Jun</Month></PubDate></JournalIssue><Title>Genomics data</Title><ISOAbbreviation>Genom Data</ISOAbbreviation></Journal><ArticleTitle>Draft genome of the oomycete pathogen <i>Phytophthora cactorum</i> strain LV007 isolated from European beech (<i>Fagus sylvatica</i>).</ArticleTitle><Pagination><MedlinePgn>155-156</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.gdata.2017.05.010</ELocationID><Abstract><AbstractText><i>Phytophthora cactorum</i> is a broad host range phytopathogenic oomycete. <i>P. cactorum</i> strain LV007 was isolated from a diseased European Beech (<i>Fagus sylvatica</i>) in Malmö, Sweden in 2016. The draft genome of <i>P. cactorum</i> strain LV007 is 67.81 Mb. It contains 15,567 contigs and 21,876 predicted protein-coding genes. As reported for other phytopathogenic Phytophthora species, cytoplasmic effector proteins including RxLR and CRN families were identified. The genome sequence has been deposited at DDBJ/ENA/GenBank under the accession NBIJ00000000. The version described in this paper is version NBIJ01000000.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Grenville-Briggs</LastName><ForeName>Laura J</ForeName><Initials>LJ</Initials><AffiliationInfo><Affiliation>Department of Plant Protection biology, Swedish University of Agricultural Sciences, Alnarp, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kushwaha</LastName><ForeName>Sandeep K</ForeName><Initials>SK</Initials><AffiliationInfo><Affiliation>Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>National Bioinformatics Infrastructure Sweden (NBIS), Department of Biology, Lund University, Lund, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cleary</LastName><ForeName>Michelle R</ForeName><Initials>MR</Initials><AffiliationInfo><Affiliation>Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Alnarp, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Witzell</LastName><ForeName>Johanna</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Alnarp, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Savenkov</LastName><ForeName>Eugene I</ForeName><Initials>EI</Initials><AffiliationInfo><Affiliation>Department of Plant Biology, Uppsala BioCenter, Linnean Centre of Plant Biology, Swedish University of Agricultural Sciences, Uppsala, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Whisson</LastName><ForeName>Stephen C</ForeName><Initials>SC</Initials><AffiliationInfo><Affiliation>Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chawade</LastName><ForeName>Aakash</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vetukuri</LastName><ForeName>Ramesh R</ForeName><Initials>RR</Initials><AffiliationInfo><Affiliation>Department of Plant Protection biology, Swedish University of Agricultural Sciences, Alnarp, Sweden.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>05</Month><Day>12</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Genom Data</MedlineTA><NlmUniqueID>101634120</NlmUniqueID><ISSNLinking>2213-5960</ISSNLinking></MedlineJournalInfo></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>04</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2017</Year><Month>05</Month><Day>11</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>05</Month><Day>12</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>6</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>6</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>6</Month><Day>1</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">28560165</ArticleId><ArticleId 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